After various research : I found information suggesting fixes related to the issue we where seeing.
1. One note suggested checking the offset on the NTP client, I noted the offset was off by 40 seconds, not a big issue, I have re-sycned the NTP client and NTPD service.
2. Another SOL suggested the issue to be wirh Web Accellorator templates, been copied over and causing the sync process to timeout.
3. My last option was to backup and delete bigip_base.conf and bigip.conf and manually create bigip_base.conf. Next step was to
b load base ( this basically wipes the config ) this only would load the bigip_base.conf file - settings that do not get synced over, and finally sync the config over from the load balancer. We are now